epiR: Tools for the Analysis of Epidemiological Data

Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.

Version: 2.0.75
Depends: R (≥ 3.0.0), survival
Imports: BiasedUrn, pander, methods, sf, lubridate, zoo, flextable, officer
Suggests: MASS (≥ 3.1-20), dplyr, foreign, ggplot2, knitr, mapproj, rmarkdown, plyr, RColorBrewer, scales, sp, spData (≥ 2.3.0), spatstat, tidyr
Published: 2024-06-17
DOI: 10.32614/CRAN.package.epiR
Author: Mark Stevenson ORCID iD [aut, cre], Evan Sergeant [aut], Cord Heuer [ctb], Telmo Nunes [ctb], Cord Heuer [ctb], Jonathon Marshall [ctb], Javier Sanchez [ctb], Ron Thornton [ctb], Jeno Reiczigel [ctb], Jim Robison-Cox [ctb], Paola Sebastiani [ctb], Peter Solymos [ctb], Kazuki Yoshida [ctb], Geoff Jones [ctb], Sarah Pirikahu [ctb], Simon Firestone [ctb], Ryan Kyle [ctb], Johann Popp [ctb], Mathew Jay [ctb], Allison Cheung [ctb], Nagendra Singanallur [ctb], Aniko Szabo [ctb], Ahmad Rabiee [ctb]
Maintainer: Mark Stevenson <mark.stevenson1 at unimelb.edu.au>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: NEWS
In views: Epidemiology, MetaAnalysis, Survival
CRAN checks: epiR results


Reference manual: epiR.pdf
Vignettes: Descriptive epidemiology
Measures of association
Sample size calculations
Disease surveillance


Package source: epiR_2.0.75.tar.gz
Windows binaries: r-devel: epiR_2.0.75.zip, r-release: epiR_2.0.75.zip, r-oldrel: epiR_2.0.75.zip
macOS binaries: r-release (arm64): epiR_2.0.75.tgz, r-oldrel (arm64): epiR_2.0.75.tgz, r-release (x86_64): epiR_2.0.75.tgz, r-oldrel (x86_64): epiR_2.0.75.tgz
Old sources: epiR archive

Reverse dependencies:

Reverse depends: EpiStats, RcmdrPlugin.EBM
Reverse imports: Dtableone, dtComb, gofcat, granulator, PSS.Health, pubh, RSurveillance, spectacles
Reverse suggests: broom, FRESA.CAD, insight, metaConvert, metaumbrella, parameters


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