autothresholdr: An R Port of the 'ImageJ' Plugin 'Auto Threshold'

Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <> and Landini et al. (2017) <doi:10.1111/jmi.12474>.

Version: 1.4.2
Depends: R (≥ 3.5)
Imports: checkmate (≥ 1.9.3), ijtiff (≥ 2.2), magrittr (≥ 1.5), purrr, Rcpp (≥ 1.0.11), rlang (≥ 0.3.3), stats, strex (≥ 1.4.1), stringr (≥ 1.4)
LinkingTo: Rcpp (≥ 1.0.11)
Suggests: covr, dplyr, ggplot2, knitr, rmarkdown, spelling, styler (≥ 1.3.2), testthat (≥ 3.0), utils
Published: 2023-12-13
DOI: 10.32614/CRAN.package.autothresholdr
Author: Rory Nolan ORCID iD [aut, cre, trl], Luis Alvarez ORCID iD [ctb], Sergi Padilla-Parra ORCID iD [ctb, ths], Gabriel Landini ORCID iD [ctb, cph]
Maintainer: Rory Nolan <rorynoolan at>
License: GPL-3
NeedsCompilation: yes
Language: en-US
Citation: autothresholdr citation info
Materials: NEWS
CRAN checks: autothresholdr results


Reference manual: autothresholdr.pdf
Vignettes: Finding Thresholds
Thresholding Image Stacks
Thresholding Images


Package source: autothresholdr_1.4.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): autothresholdr_1.4.2.tgz, r-oldrel (arm64): autothresholdr_1.4.2.tgz, r-release (x86_64): autothresholdr_1.4.2.tgz, r-oldrel (x86_64): autothresholdr_1.4.2.tgz
Old sources: autothresholdr archive

Reverse dependencies:

Reverse imports: coveR2, detrendr, hemispheR, nandb
Reverse suggests: rcaiman


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