Last updated on 2025-11-14 07:48:46 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.30.26 | 2.55 | 35.33 | 37.88 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.30.26 | 1.99 | 27.32 | 29.31 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.30.26 | 10.00 | 48.44 | 58.44 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.30.26 | 218.74 | ERROR | |||
| r-devel-windows-x86_64 | 1.30.26 | 4.00 | 56.00 | 60.00 | OK | |
| r-patched-linux-x86_64 | 1.30.26 | 2.62 | 31.26 | 33.88 | OK | |
| r-release-linux-x86_64 | 1.30.26 | 2.30 | 31.29 | 33.59 | OK | |
| r-release-macos-arm64 | 1.30.26 | 1.00 | 112.00 | 113.00 | OK | |
| r-release-macos-x86_64 | 1.30.26 | 3.00 | 274.00 | 277.00 | OK | |
| r-release-windows-x86_64 | 1.30.26 | 6.00 | 55.00 | 61.00 | OK | |
| r-oldrel-macos-arm64 | 1.30.26 | 1.00 | 144.00 | 145.00 | OK | |
| r-oldrel-macos-x86_64 | 1.30.26 | 3.00 | 255.00 | 258.00 | OK | |
| r-oldrel-windows-x86_64 | 1.30.26 | 5.00 | 81.00 | 86.00 | OK |
Version: 1.30.26
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(BiocManager)
Bioconductor version '3.22' requires R version '4.5'; use `version = '3.23'`
with R version 4.6; see https://bioconductor.org/install
>
> test_check("BiocManager")
Saving _problems/test_version-373.R
Saving _problems/test_version-385.R
Saving _problems/test_version-424.R
[ FAIL 3 | WARN 2 | SKIP 28 | PASS 75 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (9): 'test_repositories.R:80:5', 'test_repositories.R:173:5',
'test_repositories.R:211:5', 'test_version.R:17:5', 'test_version.R:39:5',
'test_version.R:235:5', 'test_version.R:246:5', 'test_version.R:277:5',
'test_version.R:428:5'
• mis-configuration, R 4.6.0, Bioconductor 3.22 (18): 'test_install.R:26:5',
'test_install.R:44:5', 'test_install.R:218:5', 'test_install.R:347:5',
'test_repositories.R:4:5', 'test_repositories.R:13:5',
'test_repositories.R:19:5', 'test_repositories.R:25:5',
'test_repositories.R:33:5', 'test_repositories.R:89:5',
'test_repositories.R:100:5', 'test_repositories.R:163:5', 'test_valid.R:4:5',
'test_version.R:91:5', 'test_version.R:106:5', 'test_version.R:146:5',
'test_version.R:193:5', 'test_version.R:327:5'
• too idiosyncratic for standardized testing (1): 'test_install.R:179:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_version.R:365:5'): .version_BiocVersion returns .version_sentinel output ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
ℹ Please use `with_mocked_bindings()` instead.
Backtrace:
▆
1. └─testthat::with_mock(...) at test_version.R:365:5
2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
3. └─lifecycle:::deprecate_stop0(msg)
4. └─rlang::cnd_signal(...)
── Error ('test_version.R:377:5'): .version_map_get_offline() works ────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
ℹ Please use `with_mocked_bindings()` instead.
Backtrace:
▆
1. └─testthat::with_mock(...) at test_version.R:377:5
2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
3. └─lifecycle:::deprecate_stop0(msg)
4. └─rlang::cnd_signal(...)
── Error ('test_version.R:413:5'): version chooses best ────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
ℹ Please use `with_mocked_bindings()` instead.
Backtrace:
▆
1. └─testthat::with_mock(...) at test_version.R:413:5
2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
3. └─lifecycle:::deprecate_stop0(msg)
4. └─rlang::cnd_signal(...)
[ FAIL 3 | WARN 2 | SKIP 28 | PASS 75 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.30.26
Check: tests
Result: ERROR
Running ‘testthat.R’ [154s/354s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(BiocManager)
Bioconductor version '3.22' requires R version '4.5'; use `version = '3.23'`
with R version 4.6; see https://bioconductor.org/install
>
> test_check("BiocManager")
Saving _problems/test_version-373.R
Saving _problems/test_version-385.R
Saving _problems/test_version-424.R
[ FAIL 3 | WARN 2 | SKIP 28 | PASS 75 ]
══ Skipped tests (28) ══════════════════════════════════════════════════════════
• On CRAN (9): 'test_repositories.R:80:5', 'test_repositories.R:173:5',
'test_repositories.R:211:5', 'test_version.R:17:5', 'test_version.R:39:5',
'test_version.R:235:5', 'test_version.R:246:5', 'test_version.R:277:5',
'test_version.R:428:5'
• mis-configuration, R 4.6.0, Bioconductor 3.22 (18): 'test_install.R:26:5',
'test_install.R:44:5', 'test_install.R:218:5', 'test_install.R:347:5',
'test_repositories.R:4:5', 'test_repositories.R:13:5',
'test_repositories.R:19:5', 'test_repositories.R:25:5',
'test_repositories.R:33:5', 'test_repositories.R:89:5',
'test_repositories.R:100:5', 'test_repositories.R:163:5', 'test_valid.R:4:5',
'test_version.R:91:5', 'test_version.R:106:5', 'test_version.R:146:5',
'test_version.R:193:5', 'test_version.R:327:5'
• too idiosyncratic for standardized testing (1): 'test_install.R:179:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_version.R:365:5'): .version_BiocVersion returns .version_sentinel output ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
ℹ Please use `with_mocked_bindings()` instead.
Backtrace:
▆
1. └─testthat::with_mock(...) at test_version.R:365:5
2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
3. └─lifecycle:::deprecate_stop0(msg)
4. └─rlang::cnd_signal(...)
── Error ('test_version.R:377:5'): .version_map_get_offline() works ────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
ℹ Please use `with_mocked_bindings()` instead.
Backtrace:
▆
1. └─testthat::with_mock(...) at test_version.R:377:5
2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
3. └─lifecycle:::deprecate_stop0(msg)
4. └─rlang::cnd_signal(...)
── Error ('test_version.R:413:5'): version chooses best ────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
ℹ Please use `with_mocked_bindings()` instead.
Backtrace:
▆
1. └─testthat::with_mock(...) at test_version.R:413:5
2. └─lifecycle::deprecate_stop("3.2.0", "with_mock()", "with_mocked_bindings()")
3. └─lifecycle:::deprecate_stop0(msg)
4. └─rlang::cnd_signal(...)
[ FAIL 3 | WARN 2 | SKIP 28 | PASS 75 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc