microeco: Microbial Community Ecology Data Analysis

A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.

Version: 1.8.0
Depends: R (≥ 3.5.0)
Imports: R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2 (≥ 3.5.0), RColorBrewer, reshape2, igraph
Suggests: GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, rgexf, mice, GGally
Published: 2024-06-28
DOI: 10.32614/CRAN.package.microeco
Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Minjie Yao [ctb], Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426 at 126.com>
License: GPL-3
URL: https://github.com/ChiLiubio/microeco
NeedsCompilation: no
Citation: microeco citation info
CRAN checks: microeco results


Reference manual: microeco.pdf


Package source: microeco_1.8.0.tar.gz
Windows binaries: r-devel: microeco_1.8.0.zip, r-release: microeco_1.8.0.zip, r-oldrel: microeco_1.8.0.zip
macOS binaries: r-release (arm64): microeco_1.8.0.tgz, r-oldrel (arm64): microeco_1.8.0.tgz, r-release (x86_64): microeco_1.8.0.tgz, r-oldrel (x86_64): microeco_1.8.0.tgz
Old sources: microeco archive

Reverse dependencies:

Reverse imports: file2meco, meconetcomp, mecoturn


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