canprot: Chemical Analysis of Proteins

Chemical analysis of proteins based on their amino acid compositions. Amino acid compositions can be read from FASTA files and used to calculate chemical metrics including carbon oxidation state and stoichiometric hydration state, as described in Dick et al. (2020) <doi:10.5194/bg-17-6145-2020>. Other properties that can be calculated include protein length, grand average of hydropathy (GRAVY), isoelectric point (pI), molecular weight (MW), standard molal volume (V0), and metabolic costs (Akashi and Gojobori, 2002 <doi:10.1073/pnas.062526999>; Wagner, 2005 <doi:10.1093/molbev/msi126>; Zhang et al., 2018 <doi:10.1038/s41467-018-06461-1>). A database of amino acid compositions of human proteins derived from UniProt is provided.

Version: 2.0.0
Depends: R (≥ 3.1.0)
Imports: stringi, multcompView
Suggests: knitr, rmarkdown, tinytest, CHNOSZ (≥ 1.3.4)
Published: 2024-03-28
Author: Jeffrey Dick ORCID iD [aut, cre]
Maintainer: Jeffrey Dick <j3ffdick at gmail.com>
License: GPL-3
URL: https://github.com/jedick/canprot
NeedsCompilation: no
Materials: README NEWS
CRAN checks: canprot results

Documentation:

Reference manual: canprot.pdf
Vignettes: Demos for canprot
Introduction to canprot
More about metrics

Downloads:

Package source: canprot_2.0.0.tar.gz
Windows binaries: r-devel: canprot_2.0.0.zip, r-release: canprot_2.0.0.zip, r-oldrel: canprot_2.0.0.zip
macOS binaries: r-release (arm64): canprot_2.0.0.tgz, r-oldrel (arm64): canprot_2.0.0.tgz, r-release (x86_64): canprot_2.0.0.tgz
Old sources: canprot archive

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